Heredity and Gene Expression
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Biology 103: Botany >
Exam Two
Learning Objectives
- Understand the structure of DNA and how it functions in complementary base pairing.
- Understand Central Dogma (replication, transcription, translation).
- Understand gene structure (promoter, exons, introns).
- Compare and contrast DNA and RNA.
Solutions
- DNA has three functional structural components: a nitrogenous base (adenine, cytosine, guanine, and thymine), a 5-carbon sugar (in DNA, it's deoxyribose), and a phosphate group. The nitrogenous bases, as the name suggests, are what is important in complementary base pairing. Adenine will only pair with thymine, and cytosine will only pair with guanine. Adenine and guanine have two rings, called purines. Cytosine and thymine have one single ring, called pyramindines. The only amount of rings any one base pair can have is two rings, so a pryamidine must pair with a purine. In addition, adenine and thymine can form two hydrogen bonds, and cytosine and guanine can form three hydrogen bonds. Thus, adenine must pair with thymine, and cytosine must pair with guanine. Outside of complementary base pairing, the phosphate group and sugar create the side of the "ladder", structuring the DNA. The base pairs are bonded to the sugar, not the phosphate group.
- Replication is DNA creating more DNA with the enzyme DNA polymerase. This process is how the chromosomes are duplicated. It occurs during interphase. DNA "unzips" and never "zips" back together, and are used as a template for the new doulbe strands for DNA. Transciption is DNA creating RNA with the enzyme RNA polymerase. It creates many different kinds of RNA, including messenger RNA (mRNA), with is translated to produces proteins; transfer RNA (tRNA) and ribosomal RNA (rRNA), which are considered "machinery" for translation, and micro RNA (miRNA), which is regulatory. A single-stranded RNA is produced, and only the coding DNA is transcribed. Translation is RNA creating or coding for proteins with tRNA and mRNA, and it takes place in the ribosome. The genetic code is based on codons, which are strings of 3 nucleotides, creating 64 possible combinations for the 20 amino acids. This code is universal for all bacteria, protists, fungi, plants, and animals. tRNA binds one end to mRNA via an anticodon (complementary base pair), and the other end to an amino acid. There is at least one tRNA for each amino acid. The amino acid will connect to the protein chain created by mRNA when the complementary base pairs connect.
- A promotor region singles the transcription enzyme to begin copying the gene, and the terminator enzyme signals the transcription enzyme to fall off. An intron is an "intervening" part of the DNA, and is removed before the mRNA is finalized. An exon is an "expressed" part of the final DNA, and is kept in the final mRNA. This occurs in the nucleus. The finalized mRNA is transported to the cytosol for translation.
- DNA has deoxyribose as the 5-carbon sugar; is double stranded; and uses adenine, cytosine, guanine, and thymine as nitrogenous bases. DNA has ribose as the 5-carbon sugar; is single stranded; and uses adenine, cytosine, guanine, and uracil as nitrogenous bases.
Notes
Structure of DNA
- Chromosomes are composed of:
- DNA (genes)
- Proteins (structural)
- Nucleotides has 3 parts:
- A nitrogenous base
- A 5-carbon sugar
- A phosphate group
- DNA is wound around histones (proteins)
- Monomers are 4 different nucleotides: adenine, cytosine, guanine, and thymine
- Each nucleotide has a unique nitrogenous base
- Purines: two ring
- Pyrimidines: single ring
- The phosphate group and sugar make up the side of the "ladder", and the nitrogenous bases make up the "rungs".
- Ladder is unwound double helix structure
- The space is specific between the rungs (around 3 rings); the only combination that fits perfectly are 1 two ring and 1 single ring.
- The number of hydrogen bonds limit potential bonds to A+T and C+G.
- THe helix structure is due to molecular angles of the nucleotides.
DNA Functions
- Genome: all of an organism's DNA, including noncoding
- Gene: segment fo DNA that directs protein synthesis, not including noncoding
Central Dogma of Molecular Genetics
- Replication
- Transcription
- Translation
- RNA → protein
- tRNA, mRNA
- In the ribosome
Replication
- Duplication of chromosome
- Occurs during the S phase of cell cycle (interphase)
- Strands of double helix unzip
- Single strands are templates for creation of new double strands
- Nucleotides added by DNA polymerase in precise sequence: G+C and A+T
- Two original strands never go back together
Gene Expression
- Depends on
- Cell type
- Environment
- Developmental stage
- Requires two processes
- Transcription: copy of DNA template using RNA
- RNA
- Ribose as a sugar
- Single stranded
- Uses uracil instead of thymine
- Translation: RNA translated to produce proteins
- Genes in different cell types have different functions and needs.
- Environments create changing conditions
Transcription
- Many different types of RNA produced:
- Messenger RNA (mRNA): translated to produce protein
- Transfer RNA (tRNA): machinery for translation
- Ribosomal RNA (rRNA): machinery for translation
- micro RNA (miRNA): regulatory
- RNA polymerase adds nucleotides to one strand of DNA
- Complementary base pairing
- Single-stranded RNA produced
- Only portions of the genome transcribed
- Remaining portions after transcription is noncoding DNA
Gene Structure
- Promotor region at the beginning of every gene signals transcription enzyme to begin copying gene
- Terminator region at the end of every gene signals transcription enzymes to fall off
mRNA Splicing
- Introns
- "Intervening"
- Removed; not part of the final mRNA
- Exons
- "Expressed"
- Make up the final mRNA
- Occurs in the nucleus
- Finished mRNA transported to cytosol for translation
Non-Protein Coding DNA
- Not all transcribed RNA gets translated
Translation
- mRNA transcripts code for proteins
- Genetic code based on codons
- Codons: 3 nucleotides
- 64 possible combination that code for 20 amino acids
- If codons were 2 nucleotides long, there could only be 16 possible combinations
- Genetic code is universal in bacteria, protists, fungi, plants, and animals
- tRNA: translator during translation
- One ends binds to mRNA
- Other end binds to specific amino acid
- At least one tRNA for each amino acid
- Each tRNA has an anticodon: 3 nucleotides that pair with codon on mRNA
- rRNA
- Together with specific proteins, form ribosomes
- Scaffolding for translation